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Help on Help on treecon format


Using the forms interface to the LSU and SSU databases, the sequences or alignments can be obtained in a number of formats. Currently the following formats are supported:
DCSE alignment
Format used by the program DCSE to store alignments: contains both gaps and secondary structure information, but no reference information. The appropriate Helix numbering lines are automatically inserted. This format can contain extremely long lines; not all browsers can handle this. Therefore these files are downloaded as type text/DCSE, and will usually be saved straight to disk.
DCSE reference
Format used by the program DCSE to store reference information: contains reference information, but no gaps and secondary structure information. The plain sequence is included.
TREECON format
Format used by the program TREECON: contains gaps but no secondary structure information.
EMBL
A format based on the format used in the EMBL Nucleotide Sequence Library. The sequences contain gap symbols, but no structure information. Reference information is present.
Distribution format
The format in which the sequences are stored on the server. This format contains all information.
Printable alignment
Alignment with structure information cut into slices which will fit on a page. WARNING: It can take a considerable time before anything will appear on your browser. This format is limited to a selection of 100 sequences. The appropriate Helix numbering lines are automatically inserted.
NBRF/PIR
A format based on the NBRF/PIR format. It contains gap symbols, but no structure nor reference information.