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Current bacterial LSU rRNA primers


Reference organism: Escherichia coli
Number of nucleotides: 2904

        10        20        30        40        50
....|....|....|....|....|....|....|....|....|....|
GGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGAT
                                                  
                                                  
                                                  
                                                  

        60        70        80        90       100
....|....|....|....|....|....|....|....|....|....|
GAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTT
                                                  
                                                  
                                                  
                                                  

       110       120       130       140       150
....|....|....|....|....|....|....|....|....|....|
ATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT
                                                  
                                                  
                                                  
                                                  

       160       170       180       190       200
....|....|....|....|....|....|....|....|....|....|
CATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACAT
                                     |----BLF188/2
                                                  
                                                  
                                                  

       210       220       230       240       250
....|....|....|....|....|....|....|....|....|....|
CTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCG
0----->                                           
                                                  
                                                  
                                                  

       260       270       280       290       300
....|....|....|....|....|....|....|....|....|....|
AGCGAACGGGGAGCAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAA
                                                  
                                                  
                                                  
                                                  

       310       320       330       340       350
....|....|....|....|....|....|....|....|....|....|
GCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATG
                                                  
                                                  
                                                  
                                                  

       360       370       380       390       400
....|....|....|....|....|....|....|....|....|....|
CACATGCTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTG
                                                  
                                                  
                                                  
                                                  

       410       420       430       440       450
....|....|....|....|....|....|....|....|....|....|
AATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAG
                                           <----BL
                                                  
                                                  
                                                  

       460       470       480       490       500
....|....|....|....|....|....|....|....|....|....|
TGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTG
R463/20-----|                                     
                                                  
                                                  
                                                  

       510       520       530       540       550
....|....|....|....|....|....|....|....|....|....|
AAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTTAGGC
                                                  
                                                  
                                                  
                                                  

       560       570       580       590       600
....|....|....|....|....|....|....|....|....|....|
GTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAG
                                                  
                                                  
                                                  
                                                  

       610       620       630       640       650
....|....|....|....|....|....|....|....|....|....|
CAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAACTGGGC
                                                  
                                                  
                                                  
                                                  

       660       670       680       690       700
....|....|....|....|....|....|....|....|....|....|
GTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCATGGGCAG
                                                  
                                                  
                                                  
                                                  

       710       720       730       740       750
....|....|....|....|....|....|....|....|....|....|
GTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAA
                                                  
                                                  
                                                  
                                                  

       760       770       780       790       800
....|....|....|....|....|....|....|....|....|....|
AAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGA
                                                  
                                                  
                                                  
                                                  

       810       820       830       840       850
....|....|....|....|....|....|....|....|....|....|
GATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAATTCAT
                                                  
                                                  
                                                  
                                                  

       860       870       880       890       900
....|....|....|....|....|....|....|....|....|....|
CTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAA
                                                  
                                                  
                                                  
                                                  

       910       920       930       940       950
....|....|....|....|....|....|....|....|....|....|
CCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGG
                                                  
                                                  
                                                  
                                                  

       960       970       980       990      1000
....|....|....|....|....|....|....|....|....|....|
CGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTA
                                                  
                                                  
                                                  
                                                  

      1010      1020      1030      1040      1050
....|....|....|....|....|....|....|....|....|....|
AGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACA
                                                  
                                                  
                                                  
                                                  

      1060      1070      1080      1090      1100
....|....|....|....|....|....|....|....|....|....|
GCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGC
    |----BLF1055/20---->                          
                                                  
                                                  
                                                  

      1110      1120      1130      1140      1150
....|....|....|....|....|....|....|....|....|....|
TCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGC
                                                  
                                                  
                                                  
                                                  

      1160      1170      1180      1190      1200
....|....|....|....|....|....|....|....|....|....|
ACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTC
                                                  
                                                  
                                                  
                                                  

      1210      1220      1230      1240      1250
....|....|....|....|....|....|....|....|....|....|
TGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTG
                                                  
                                                  
                                                  
                                                  

      1260      1270      1280      1290      1300
....|....|....|....|....|....|....|....|....|....|
CGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGG
                                                  
                                                  
                                                  
                                                  

      1310      1320      1330      1340      1350
....|....|....|....|....|....|....|....|....|....|
AAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC
                                                  
                                                  
                                                  
                                                  

      1360      1370      1380      1390      1400
....|....|....|....|....|....|....|....|....|....|
CTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCT
                             |----BLF1380/20----> 
                                                  
                                                  
                                                  

      1410      1420      1430      1440      1450
....|....|....|....|....|....|....|....|....|....|
GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGG
                                                  
                                                  
                                                  
                                                  

      1460      1470      1480      1490      1500
....|....|....|....|....|....|....|....|....|....|
CGACGGTTGTCCCGGTTTAAGCGTGTAGGCTGGTTTTCCAGGCAAATCCG
                                                  
                                                  
                                                  
                                                  

      1510      1520      1530      1540      1550
....|....|....|....|....|....|....|....|....|....|
GAAAATCAAGGCTGAGGCGTGATGACGAGGCACTACGGTGCTGAAGCAAC
                                                  
                                                  
                                                  
                                                  

      1560      1570      1580      1590      1600
....|....|....|....|....|....|....|....|....|....|
AAATGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATC
                                                  
                                                  
                                                  
                                                  

      1610      1620      1630      1640      1650
....|....|....|....|....|....|....|....|....|....|
GTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGA
                                                  
                                                  
                                                  
                                                  

      1660      1670      1680      1690      1700
....|....|....|....|....|....|....|....|....|....|
GAGAACTCGGGTGAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGA
                <----BLR1686/20----|              
                                                  
                                                  
                                                  

      1710      1720      1730      1740      1750
....|....|....|....|....|....|....|....|....|....|
AGGCACGCTGATATGTAGGTGAGGTCCCTCGCGGATGGAGCTGAAATCAG
                                                  
                                                  
                                                  
                                                  

      1760      1770      1780      1790      1800
....|....|....|....|....|....|....|....|....|....|
TCGAAGATACCAGCTGGCTGCAACTGTTTATTAAAAACACAGCACTGTGC
                                                  
                                                  
                                                  
                                                  

      1810      1820      1830      1840      1850
....|....|....|....|....|....|....|....|....|....|
AAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGG
                                                  
                                                  
                                                  
                                                  

      1860      1870      1880      1890      1900
....|....|....|....|....|....|....|....|....|....|
TTAATTGATGGGGTTAGCGCAAGCGAAGCTCTTGATCGAAGCCCCGGTAA
                                                  
                                                  
                                                  
                                                  

      1910      1920      1930      1940      1950
....|....|....|....|....|....|....|....|....|....|
ACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGG
         <----BLR1929/20----|                     
                                                  
                                                  
                                                  

      1960      1970      1980      1990      2000
....|....|....|....|....|....|....|....|....|....|
TAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACC
                                                  
                                                  
                                                  
                                                  

      2010      2020      2030      2040      2050
....|....|....|....|....|....|....|....|....|....|
CGAGACTCAGTGAAATTGAACTCGCTGTGAAGATGCAGTGTACCCGCGGC
                                                  
                                                  
                                                  
                                                  

      2060      2070      2080      2090      2100
....|....|....|....|....|....|....|....|....|....|
AAGACGGAAAGACCCCGTGAACCTTTACTATAGCTTGACACTGAACATTG
                                                  
                                                  
                                                  
                                                  

      2110      2120      2130      2140      2150
....|....|....|....|....|....|....|....|....|....|
AGCCTTGATGTGTAGGATAGGTGGGAGGCTTTGAAGTGTGGACGCCAGTC
                                                  
                                                  
                                                  
                                                  

      2160      2170      2180      2190      2200
....|....|....|....|....|....|....|....|....|....|
TGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAAC
                                                  
                                                  
                                                  
                                                  

      2210      2220      2230      2240      2250
....|....|....|....|....|....|....|....|....|....|
GTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTG
                                                  
                                                  
                                                  
                                                  

      2260      2270      2280      2290      2300
....|....|....|....|....|....|....|....|....|....|
GGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATC
                                                  
                                                  
                                                  
                                                  

      2310      2320      2330      2340      2350
....|....|....|....|....|....|....|....|....|....|
CTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGC
                                                  
                                                  
                                                  
                                                  

      2360      2370      2380      2390      2400
....|....|....|....|....|....|....|....|....|....|
GAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGG
                                                  
                                                  
                                                  
                                                  

      2410      2420      2430      2440      2450
....|....|....|....|....|....|....|....|....|....|
TTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA
                                                  
                                                  
                                                  
                                                  

      2460      2470      2480      2490      2500
....|....|....|....|....|....|....|....|....|....|
ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCT
                                                  
                                                  
                                                  
                                                  

      2510      2520      2530      2540      2550
....|....|....|....|....|....|....|....|....|....|
CGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTATGG
                                                  
                                                  
                                                  
                                                  

      2560      2570      2580      2590      2600
....|....|....|....|....|....|....|....|....|....|
CTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGA
                              |----BLF2581/20---->
                         <----BLR2595/20----|     
                                                  
                                                  

      2610      2620      2630      2640      2650
....|....|....|....|....|....|....|....|....|....|
CAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAACTGAGGGGGGCTGCT
                                                  
                                                  
                                                  
                                                  

      2660      2670      2680      2690      2700
....|....|....|....|....|....|....|....|....|....|
CCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCA
                                                  
                                                  
                                                  
                                                  

      2710      2720      2730      2740      2750
....|....|....|....|....|....|....|....|....|....|
TGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAA
                                           <----BL
                                                  
                                                  
                                                  

      2760      2770      2780      2790      2800
....|....|....|....|....|....|....|....|....|....|
GCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAA
R2763/20----|                                     
                                                  
                                                  
                                                  

      2810      2820      2830      2840      2850
....|....|....|....|....|....|....|....|....|....|
GGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTA
                                                  
                                                  
                                                  
                                                  

      2860      2870      2880      2890      2900
....|....|....|....|....|....|....|....|....|....|
AGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAA
                                                  
                                                  
                                                  
                                                  

   
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CCT
   
   
   
   

Document last updated: Tue Jul 15 12:00:49 MEST 2003