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Current eukaryotic SSU rRNA primers


Reference organism: Saccharomyces cerevisiae
Number of nucleotides: 1798

        10        20        30        40        50
....|....|....|....|....|....|....|....|....|....|
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC
   |----NSF4/18----->                             
                                                  
                                                  
                                                  

        60        70        80        90       100
....|....|....|....|....|....|....|....|....|....|
ATGCATGTCTAAGTATAAGCAATTTATACAGTGAAACTGCGAATGGCTCA
                                |-----NSF83/20----
                                <----NSR102/20----
                                                  
                                                  

       110       120       130       140       150
....|....|....|....|....|....|....|....|....|....|
TTAAATCAGTTATCGTTTATTTGATAGTTCCTTTACTACATGGTATAACC
->                                                
-|                                                
                                                  
                                                  

       160       170       180       190       200
....|....|....|....|....|....|....|....|....|....|
GTGGTAATTCTAGAGCTAATACATGCTTAAAATCTCGACCCTTTGGAAGA
                                                  
                                                  
                                                  
                                                  

       210       220       230       240       250
....|....|....|....|....|....|....|....|....|....|
GATGTATTTATTAGATAAAAAATCAATGTCTTCGGACTCTTTGATGATTC
                                                  
                                                  
                                                  
                                                  

       260       270       280       290       300
....|....|....|....|....|....|....|....|....|....|
ATAATAACTTTTCGAATCGCATGGCCTTGTGCTGGCGATGGTTCATTCAA
                                                  
                                                  
                                                  
                                                  

       310       320       330       340       350
....|....|....|....|....|....|....|....|....|....|
ATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTTT
                                                  
                                                  
                                                  
                                                  

       360       370       380       390       400
....|....|....|....|....|....|....|....|....|....|
CAACGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA
                   |---NSF370/18---->             
                   <---NSR387/18----|             
                              <----NSR399/19----| 
                                                  

       410       420       430       440       450
....|....|....|....|....|....|....|....|....|....|
ACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCT
                                                  
                                                  
                                                  
                                                  

       460       470       480       490       500
....|....|....|....|....|....|....|....|....|....|
AATTCAGGGAGGTAGTGACAATAAATAACGATACAGGGCCCATTCGGGTC
                                                  
                                                  
                                                  
                                                  

       510       520       530       540       550
....|....|....|....|....|....|....|....|....|....|
TTGTAATTGGAATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGA
                                                  
                                                  
                                                  
                                                  

       560       570       580       590       600
....|....|....|....|....|....|....|....|....|....|
GGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTAT
             <---NSR581/18----|                   
                      |----NSF573/19---->         
                                                  
                                                  

       610       620       630       640       650
....|....|....|....|....|....|....|....|....|....|
ATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACTTTGGGCCCGGTT
                                                  
                                                  
                                                  
                                                  

       660       670       680       690       700
....|....|....|....|....|....|....|....|....|....|
GGCCGGTCCGATTTTTTCGTGTACTGGATTTCCAACGGGGCCTTTCCTTC
                                                  
                                                  
                                                  
                                                  

       710       720       730       740       750
....|....|....|....|....|....|....|....|....|....|
TGGCTAACCTTGAGTCCTTGTGGCTCTTGGCGAACCAGGACTTTTACTTT
                                                  
                                                  
                                                  
                                                  

       760       770       780       790       800
....|....|....|....|....|....|....|....|....|....|
GAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATATATTAGCAT
                                                  
                                                  
                                                  
                                                  

       810       820       830       840       850
....|....|....|....|....|....|....|....|....|....|
GGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCA
                                                  
                                                  
                                                  
                                                  

       860       870       880       890       900
....|....|....|....|....|....|....|....|....|....|
TCGTAATGATTAATAGGGACGGTCGGGGGCATCGGTATTCAATTGTCGAG
                                                  
                                                  
                                                  
                                                  

       910       920       930       940       950
....|....|....|....|....|....|....|....|....|....|
GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCA
                                  <---NSR951/17---
                                                  
                                                  
                                                  

       960       970       980       990      1000
....|....|....|....|....|....|....|....|....|....|
AGGACGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCGAAGATGATCT
|           |---NSF963/18---->          |--NSF991/
            <---NSR980/18----|                    
                                                  
                                                  

      1010      1020      1030      1040      1050
....|....|....|....|....|....|....|....|....|....|
GGTACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGATCGGGTGGTG
16--->                                            
                                                  
                                                  
                                                  

      1060      1070      1080      1090      1100
....|....|....|....|....|....|....|....|....|....|
TTTTTTTAATGACCCACTCGGTACCTTACGAGAAATCAAAGTCTTTGGGT
                                                  
                                                  
                                                  
                                                  

      1110      1120      1130      1140      1150
....|....|....|....|....|....|....|....|....|....|
TCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAG
                           <----NSR1147/20----|   
                                                  
                                                  
                                                  

      1160      1170      1180      1190      1200
....|....|....|....|....|....|....|....|....|....|
GGCACCACTAGGAGTGGAGCCTGCGGCTAATTTGACTCAACACGGGGAAA
                            |---NSF1179/18--->    
                                                  
                                                  
                                                  

      1210      1220      1230      1240      1250
....|....|....|....|....|....|....|....|....|....|
CTCACCAGGTCCAGACACAATAAGGATTGACAGATTGAGAGCTCTTTCTT
                                                  
                                                  
                                                  
                                                  

      1260      1270      1280      1290      1300
....|....|....|....|....|....|....|....|....|....|
GATTTTGTGGGTGGTGGTGCATGGCCGTTTCTCAGTTGGTGGAGTGATTT
                                                  
                                                  
                                                  
                                                  

      1310      1320      1330      1340      1350
....|....|....|....|....|....|....|....|....|....|
GTCTGCTTAATTGCGATAACGAACGAGACCTTAACCTACTAAATAGTGGT
                                                  
                                                  
                                                  
                                                  

      1360      1370      1380      1390      1400
....|....|....|....|....|....|....|....|....|....|
GCTAGCATTTGCTGGTTATCCACTTCTTAGAGGGACTATCGGTTTCAAGC
                                                  
                                                  
                                                  
                                                  

      1410      1420      1430      1440      1450
....|....|....|....|....|....|....|....|....|....|
CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGAACGTTCT
                  <----NSR1438/20----|            
                  |----NSF1419/20---->            
                                                  
                                                  

      1460      1470      1480      1490      1500
....|....|....|....|....|....|....|....|....|....|
GGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTAACCTTGGCCG
                                                  
                                                  
                                                  
                                                  

      1510      1520      1530      1540      1550
....|....|....|....|....|....|....|....|....|....|
AGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATT
                                                  
                                                  
                                                  
                                                  

      1560      1570      1580      1590      1600
....|....|....|....|....|....|....|....|....|....|
GTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGC
                                                  
                                                  
                                                  
                                                  

      1610      1620      1630      1640      1650
....|....|....|....|....|....|....|....|....|....|
TTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTAC
                       |----NSF1624/20---->       
                          <--NSR1642/16--|        
                                                  
                                                  

      1660      1670      1680      1690      1700
....|....|....|....|....|....|....|....|....|....|
CGATTGAATGGCTTAGTGAGGCCTCAGGATCTGCTTAGAGAAGGGGGCAA
                                                  
                                                  
                                                  
                                                  

      1710      1720      1730      1740      1750
....|....|....|....|....|....|....|....|....|....|
CTCCATCTCAGAGCGGAGAATTTGGACAAACTTGGTCATTTAGAGGAACT
                                                  
                                                  
                                                  
                                                  

      1760      1770      1780      1790       
....|....|....|....|....|....|....|....|....|..
AAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATT
                   <---NSR1787/18---|          
                                               
                                               
                                               

Document last updated: Tue Jul 15 12:00:47 MEST 2003